Title |
Cultural and molecular characterization of tetracycline resistant microflora associated with dental caries |
| Genetics Vol:2 Iss:1 (2010-06-15) : 1-7 |
Authors |
Luhana K.K., Patel H.D. |
Published on |
15 Jun 2010 Pages : 1-7 Article Id : BIA0000200 Views : 1068 Downloads : 1543 |
DOI | http://dx.doi.org/10.9735/0975-2862.2.1.1-7 |
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Abstract |
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Dental caries is the most common chronic disease. Tetracycline is commonly used in dental
practice as a prophylactic agent and for treatment of oral infections. The wide use of tetracycline had
resulted in a major increase in the rate of tetracycline resistance among bacteria. Substantial epidemiologic
evidence links Streptococcus mutans to caries; the pathobiology of caries may involve more complex
communities of bacterial species. Molecular methods for bacterial identification and enumeration now make
it possible to more precisely study the micro biota associated with dental caries. The purpose of this study
was to characterize the tetracycline resistant microorganism associated with the dental caries using cultural
& molecular method. The first step involved 20 samples from patients with different level of dental caries.
From which 33 different isolates were obtained, out of which 12 showed resistances to tetracycline and 5
were having maximum MIC indicating that they are highly resistant. These resistant microorganisms were
identified to the species level by growing them on a suitable medium using the antibiotic tetracycline and
were analyzed with the help of FAME analysis, which indicated that different strains of the Pseudomonas
aeruginosa and Bacillus subtilis were present.The second step involved identifying the tet k gene in the
cultures. Tet k was amplified under standard conditions by using specific primers results. Interestingly, the
results showed that tet k gene was present in all the sample. Tet k gene is involved in imparting the resistant
to the tetracycline by acting as a efflux pump. RFLP analyses were used in order to identify the polymorphic
forms of the tet k. The HindIII digest suggest that high resistance to tetracycline was acquired due to some
mutations in the genome.
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Title |
Catalytic RNA world relics in Dicer RNAs |
| Genetics Vol:2 Iss:1 (2010-06-15) : 8-17 |
Authors |
Sayak Ganguli, Dey S.K., Priyanka Dhar, Protip Basu, Paushali Roy, Abhijit Datta |
Published on |
15 Jun 2010 Pages : 8-17 Article Id : BIA0000201 Views : 1100 Downloads : 1403 |
DOI | http://dx.doi.org/10.9735/0975-2862.2.1.8-17 |
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Abstract |
Full Text |
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RNA interference (RNAi) is a naturally occurring phenomenon of RNA-mediated gene silencing
that is highly conserved among multicellular organisms. In the first step of the pathway, long doublestranded
RNA molecules are chopped into shorter duplexes with 2 nucleotide overhangs at both 3’ ends by
an endonuclease dubbed Dicer, the structure of which has been solved only recently. This results in the
formation of small 21 nucleotide long RNAs, aptly named small or short interfering RNAs (siRNAs), which
are incorporated into a multimeric protein complex, the RNA-induced silencing complex (RISC). One of the
two-siRNA strands guides RISC to a complementary RNA. After hybridization the endonucleolytic “slicerâ€
activity of RISC cleaves the target RNA, thus preventing its translation. While long double-stranded RNA
molecules can be employed to induce RNAi in lower eukaryotes, siRNAs being 21 nucleotides in length
have to be used for gene silencing in mammalian cells in order to prevent the activation of an unspecific
interferon response [1]. In contrast to siRNAs, however, miRNAs are capable of inhibiting translation of the
targeted mRNA without degrading it (at least in mammalian cells)[2-4]. The need for in silico analysis of the
components of the RNA interference pathway arises from the fact that very little is known about the
structural and interacting properties of the components. With the above background the analysis was
performed to identify putative catalytic motifs in the mRNA of the DICER enzyme.
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Title |
Assessment of DNA Damage by Comet Assay in Lymphocytes of Workers Occupationally Exposed to Petroleum fumes |
| Genetics Vol:2 Iss:1 (2010-06-15) : 18-22 |
Authors |
Ravi Kant Singh, Santosh K. Mishra, Narendra Kumar, Ajay K.Singh |
Published on |
15 Jun 2010 Pages : 18-22 Article Id : BIA0000202 Views : 1255 Downloads : 1371 |
DOI | http://dx.doi.org/10.9735/0975-2862.2.1.18-22 |
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Abstract |
Full Text |
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Open Access |
The comet assay is a sensitive, reliable and rapid method for DNA double & single strand break,
alkali-labile sites and delayed repair site detection in individual cells. In recent years, this method has been
widely used for studies of DNA repair, genetic toxicology, environmental biomonitoring, and apoptosis.
However, this technique serves as an important tool for detection of DNA damage in living organisms and is
increasingly being used in genetic testing of industrial chemicals, agrochemicals & pharmaceuticals. This
research paper helps to evaluate the health effects of exposure to organic pollutants by using comet assay
technique by KOMET 3.1 software. This study used human biomonitoring to evaluate the genotoxic effects
of exposure to organic pollutants. The experimental data suggest that the DNA damage parameters (OTM,
% T-DNA and TL) were found higher value in exposed population when compared to the control healthy
population. The percentage and distribution of cells in exposed population also increases with the increase
in OTM values. This study demonstrates that, using sensitive techniques, it is possible to detect human
health risks at an early stage when intervention is possible.
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