FREQUENCY OF PLASMID-MEDIATED QUINOLONE RESISTANCE DETERMINANTS QNR AND QEPA AMONG CLINICAL ISOLATES OF Escherichia coli and Klebsiella pneumoniae PRODUCING EXTENDED- SPECTRUM β-LACTAMASES FROM SAUDI ARABIA INTENSIVE CARE UNITS

NERMIN H. IBRAHIM1, FULWAH YAHYA ALQAHTANI2, FADILAH SFOUQ ALEANIZY3, RIHAF ALFARAJ4, AMANY Z. MAHMOUD5, AZZA S. ZAKARIA6*
1Medical Microbiology and Immunology Department, Faculty of Medicine, Beni-Suef University, Egypt
2Department of Pharmaceutics, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia
3Department of Pharmaceutics, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia
4Department of Pharmaceutics, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia
5Pharmaceutical Medicinal Chemistry Department, College of Pharmacy, Assiut University, Egypt
6Microbiology and Immunology Department, Faculty of Pharmacy, Alexandria University, Egypt
* Corresponding Author : azzazakaria@gmail.com

Received : 29-07-2017     Accepted : 17-08-2017     Published : 28-08-2017
Volume : 9     Issue : 8       Pages : 924 - 929
Int J Microbiol Res 9.8 (2017):924-929

Keywords : ICU, PMQR, Fluoroquinolones, ESBL
Academic Editor : Dr Aakash Shah
Conflict of Interest : None declared
Acknowledgements/Funding : The authors extend their appreciation to the Deanship of Scientific Research at KingSaud University for funding this work through research group NO (RGP- 1438-003)
Author Contribution : All authors contributed equally to the work

Cite - MLA : IBRAHIM, NERMIN H., et al "FREQUENCY OF PLASMID-MEDIATED QUINOLONE RESISTANCE DETERMINANTS QNR AND QEPA AMONG CLINICAL ISOLATES OF Escherichia coli and Klebsiella pneumoniae PRODUCING EXTENDED- SPECTRUM β-LACTAMASES FROM SAUDI ARABIA INTENSIVE CARE UNITS." International Journal of Microbiology Research 9.8 (2017):924-929.

Cite - APA : IBRAHIM, NERMIN H., ALQAHTANI, FULWAH YAHYA, ALEANIZY, FADILAH SFOUQ, ALFARAJ, RIHAF, MAHMOUD, AMANY Z., ZAKARIA, AZZA S. (2017). FREQUENCY OF PLASMID-MEDIATED QUINOLONE RESISTANCE DETERMINANTS QNR AND QEPA AMONG CLINICAL ISOLATES OF Escherichia coli and Klebsiella pneumoniae PRODUCING EXTENDED- SPECTRUM β-LACTAMASES FROM SAUDI ARABIA INTENSIVE CARE UNITS. International Journal of Microbiology Research, 9 (8), 924-929.

Cite - Chicago : IBRAHIM, NERMIN H., FULWAH YAHYA ALQAHTANI, FADILAH SFOUQ ALEANIZY, RIHAF ALFARAJ, AMANY Z. MAHMOUD, and AZZA S. ZAKARIA. "FREQUENCY OF PLASMID-MEDIATED QUINOLONE RESISTANCE DETERMINANTS QNR AND QEPA AMONG CLINICAL ISOLATES OF Escherichia coli and Klebsiella pneumoniae PRODUCING EXTENDED- SPECTRUM β-LACTAMASES FROM SAUDI ARABIA INTENSIVE CARE UNITS." International Journal of Microbiology Research 9, no. 8 (2017):924-929.

Copyright : © 2017, NERMIN H. IBRAHIM, et al, Published by Bioinfo Publications. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution and reproduction in any medium, provided the original author and source are credited.

Abstract

The aim of this study is to investigate the plasmid mediated quinolone resistance (PMQR) determinants (Qnr-like, QepA genes) and the relationship between PMQR and ESBL in ESBL-producing Escherichia coli and Klebsiella pneumoniae isolated from ICU patients in Saudi Arabia. A total of 34 ESBL producing E. coli and K. pneumoniae isolates were collected from different ICUs in a tertiary care hospital and identified by double disk synergy test and phenotypic confirmatory disk diffusion test. blaCTX-M, blaSHV, blaTEM genes were investigated for their presence in the phenotypic positive ESBL producing Gram negative isolates. In addition, fluoroquinolone phenotypically identified resistant strains were tested for the presence of PMQR genes; QnrA, QnrB, QnrS, QepA using PCR assay. The relationship between ESBL production and fluoroquinolone resistance was then studied. MIC determination revealed that 100%and 88.2 % of the strains were resistant to nalidixic acid and ciprofloxacin, respectively. BlaCTX gene was seen in 50% of the isolates while blaSHV gene was detected in only one isolate of each. No blaTEM gene was found among the K. pneumoniae isolates while15.3% ESBL producing E. coli harbored the blaTEM gene. Qnr genes were detected in 4 strains and all of them carried QnrB-like gene (3 E. coli, 1 K. pneumoniae), while no QnrA neither QnrS could be detected. All Qnr strains showed ESBL phenotype. Moreover, the 34 isolates showed the presence of QepA gene in 6 E. coli and 1 K. pneumoniae. Only one K. pneumoniae isolate shared both the Qnr and the QepA gene. The association between one or more of the ESBL harboring genes and Qnr determinants was found in 7 isolates (6 E. coli and 1 K. pneumoniae). Although the Qnr genes carriage rate was found low among those strains, there was a clear correlation between PMQR genes and β-lactamase genes, as well as a high resistance rate against ciprofloxacin.

References

1. Poirel L.,Bonnin R.A. andNordmann P. (2012) Infect Genet Evol, 12,883–93.
2. Goudarzi M., Azad M. and Seyedjavadi S.S. (2015) Prevalence of Plasmid-Mediated Quinolone Resistance Determinants and OqxAB Efflux Pumps among Extended-Spectrum -Lactamase Producing Klebsiella pneumoniae Isolated from Patients with Nosocomial Urinary Tract Infection in Tehran, Iran Scientifica, Volume 2015 Article ID 518167, 7 pages.
3. Apondi O. E., Oduor O. C., Gye B. K. and Kipkoech M. K. (2016) Afr J Infect Dis., 10(2), 89–95.
4. Patterson J. (2003) Semin Resp Crit Care Med, 24,79–87.
5. Winokur P., Chenoweth C., Rice L., et al. (2001) Resistant pathogens: emergence and control. In Ventilator-associated pneumonia. Edited by Wunderink RG, Rello J. Norwell, MA: Kluwer Academic Publishers;131–164.
6. Tissera K., Liyanapathirana V., Dissanayake N., Pinto V., Ekanayake A., Tennakoon M., Adasooriya D. and Nanayakkara D. (2017) BMC Infect Dis., 17, 490.
7. Esfahani B. N., Basiri R., Mirhosseini S. M. M., Moghim S. and Dolatkhah S. (2017) Adv Biomed Res., 6: 54.
8. Singh N., Pattnaik D., Neogi D. K., Jena J. and Mallick B. (2016) J ClinDiagn Res., 10(9), 19–22.
9. Jones R.N., Biedenbach D.J. and Gales A.C. (2003) Int J Antimicrob Agents, 21(1), 1–7.
10. Wong-Beringer A., Hindler J., Loeloff M., et al. (2002) Clin Infect Dis, 34,135–146.
11. EL Malki F., EL Bouraissi M. and Barrijal S. (2012) Pharmaceut Anal Acta, S15,006.
12. Cattoir V. and Nordmann P. (2009) Curr Med Chem, 16, 1028–1046.
13. Cavaco L.M., Hasman H., Xia S. and Aarestrup F.M. (2009) Antimicrob Agents Chemother, 53, 603–608.
14. Martinez-Martinez L., Cano M.L., Rodriguez-Martinez J.M. and Calvo J., Pascual A. (2008) Anti Infect Ther, 6,685–711.
15. Bopp C.A., Brenner F.W. Fields P.I., Wells J.G. and Strockbine N.A. (2003) Escherichia, shigella, and salmonella. In: Murray PR, Baron E.J., Jorgensen J.H., Landry M.L., Pfaller M.A., editors. Manual of Clinical Microbiology, 8th ed. Washington, DC: ASM Press, 654-672.
16. Abbott S.L. (2003) Klebsiella, Enterobacter, Citrobacter, Serratia, Plesiomonas, and Other Enterobacteriaceae In: Murray P.R., Baron E.J., Jorgensen J.H., Landry M.L., Pfaller M.A., editors. Manual of ClinicalMicrobiology, 8th ed. Washington, DC: ASM Press, 684-701.
17. Methods in biochemical identification of bacteria. (2001)Myer’s and Koshi’s manual of diagnostic procedures in medical microbiology and immunology/serology, 2nd ed. Vellore: Department of Clinical Microbiology, Christian MedicalCollege, 195-202.
18. Clinical and Laboratory Standards Institute. (2010) Performance standards for antimicrobial susceptibility testing. 20th Informational Supplement. M100-S20. Wayne, PA: Clinical and Laboratory Standards Institute.
19. Menon T., Bindu D., Kumar C.P., Nalini S. and Thirunarayan M.A. (2006) Indian J Med Microbiol, 24, 117-20.
20. Grover S.S., Sharma M., Chattopadhya D., Kapoor H. and Pasha S.T., Singh G. (2006) J Infect, 53, 279-88.
21. Clinical and Laboratory Standards Institute. (2010) Supplemental [Table-2A] Screening and Confirmatory Tests for ESBLs in Klebsiella pneumoniae, Klebsiellaoxytoca, Escherihia coli, and Proteus mirabilis, M100-S20 Vol 30 No. 1, Performance Standards for Antimicrobial Susceptibility Testing; 20th Informational Suppplement. 2006.
22. Clinical and Laboratory Standards Institute. (2012) Performance standards for antimicrobial susceptibility testing. Twenty second informational supplement update. CLSI document M100-S22 U. Clinical and Laboratory Standards Institute, Wayne, PA.
23. Li X., JinH., Wu Z., Rayner S. and Wang B. (2008) Nature Protocols, 3,76–180.
24. Jemima S.A. and Verghese S. (2008) IndianJ Med Res, 128, 313-317.
25. Adams-Sapper S., Sergeevna-Selezneva J., Tartof S., Raphael E., An Diep B., Perdreau-Remington F. and RileyL. W. (2012) Journal of Medical Microbiology, 61, 968–974.
26. Yagi T., Kurokawa H., Shibata N., Shibayama K. and Arakawa Y. (2000) FEMS Microbiol Lett 184, 53-6.
27. Tasli H. and Bahar I.H. (2005) Jpn J Infect Dis, 58, 162-7.
28. Wu J.J., Ko W.C., Tsai S.H. and Yan J.J. (2007) Antimicrob Agents Chemother, 51(4), 1223-1227.
29. Liu J.H., Deng Y.T., Zeng Z.L., Gao J.H., Chen L., Arakawa Y. and Chen Z.L. (2008) Antimicrob Agents Chemother, 52(8), 2992-2993.
30. Coque T.M., Baquero F. and Canton R. (2008) Increasing prevalence of ESBL-producing Enterobacteriaceae in Europe. Euro surveill, 13: 19044.
31. Paterson D.L. and Bonomo R.A. (2005) Clin. Microbiol Rev, 18, 657-86.
32. Shields R. K., Clancy C. J., Hao B., Chen L., Press E. G., Iovine N. M., Kreiswirth B. N. and Nguyen M. H. (2015)Antimicrob. Agents Chemother., 59 (9), 5793-5797.
33. Pitout J.D.D., Nordmann P., Laupland K.B. and Poire L. (2005) J Antimicrob Chemother, 56, 52-59.
34. Somily A. M., Habib H.A., Absar M.M., Arshad M.Z., Manneh K., Al Subaie S.S., Al Hedaithy M.A., Sayyed S.B., Shakoor Z. and Murray T.S. (2014) J Infect Dev Ctries, 8(9),1129-1136.
35. Kader A.A. and Kumar A.K. (2004) Saudi Med J, 25, 570-574.
36. Kader A.A. and Kumar A.K. (2005) Saudi Med J,26, 956-959.
37. Babay H.A. (2002) Saudi Med J, 23, 186-190.
38. El-Khizzi N.A. and Bakheshwain S.M. (2006) Saudi Med J,27, 37-40.
39. Esposito S. and Leone S. (2007) Int. J. Antimicrob. Agents, 29,494–500.
40. Levin P. D., Fowler R. A., Guest C., Sibbald W. J., Kiss A., and Simor A. E. (2007) Infect. Control Hosp. Epidemiol. 28, 331–336.
41. Lockhart S. R., Abramson M. A., Beekman S. E., Gallagher G., Riedel S. R., Diekma D. J., Quinn J. P. and Doern G. V. (2007) J. Clin. Microbiol. 45, 3352–3359.
42. Rhomberg P. R., Fritsche T. R, Sader H. S. and Jones R. N. (2006) Diagn. Microbiol. Infect. Dis. 56,57–62.
43. Rodrigues C., Joshi P., Jani S.H., Alphonse M., Radhakrishnan R. and Mehta A. (2004) Indian J Med Microbiol, 22, 247-50.
44. Shukla I., Tiwari R. and Agrawal M. (2004) Indian J Med Microbiol, 22, 87- 91.
45. Carattoli A. (2009) Antimicrob Agents Chemother,53, 2227-38.
46. Carattoli A. (2011) Int J Med Microbiol,301, 654-8.
47. Bradford P.A. (2001) Clin. Microbiol. Rev. 14, 933–951.
48. Kim M.H., Lee H.J., Park K.S. and Suh J.T. (2010) Yonsei Med J, 51,768–74.
49. Al-Agamy M.H., Shibl A.M. and Tawfik A.F. (2009) Ann Saudi Med, 29, 253–7.
50. Chanawong A., M’Zali F.H., Heritage J., Xiong J.H. and Hawkey P.M. (2002) Antimicrob Agents Chemother, 46, 630–7.
51. Ko K.S., Lee M.Y., Song J.H., Lee H., Jung D.S., Jung S.I., et al.(2008) Diagn. Microbiol Infect Dis, 61,453–9.
52. Sekar B., Shwetha R., Arunagiri K., Menaka K., Lalitha P., Aparna V., et al. (2006) Proceedings of MICROCON ,OB-17, 27.
53. Peirano, G. and Pitout, J. D. (2010) Int J Antimicrob Agents, 35,316–321.
54. Pitout, J. D. and Laupland, K. B. (2008) Lancet Infect Dis, 8, 159–166.
55. Veldman K., Cavaco L.M., Mevius D. et al. (2011) J Antimicrob Chemother,66: 1278-86.
56. Strahilevitz J., Jacoby G. A., Hooper D. C. and Robicsek A. (2009) Microbiol. Rev., 22 (4), 664-689.
57. Hooper D.C. (1999) Drug Resist Updat, 2, 38-55.
58. Champoux J.J. (2001) Annu Rev Biochem,70, 369-413.
59. Livermore D.M. (2009) J Antimicrob. Chemother, 64(1),29-36.
60. Cavaco L.M. andAarestrup F.M. (2009) J Clin Microbiol,47, 2751-8.
61. Robicsek A., Jacoby G.A. and Hooper D.C. (2006) Lancet Infect Dis,6, 629-40.
62. Jacoby G., Cattoir V., Hooper D. et al. (2008) Antimicrob Agents Chemother, 52, 2297-9.
63. Yamane K., Wachino J., Suzuki S.et al. (2007) Antimicrob Agents Chemother, 51, 3354-60.
64. Hansen L.H., Jensen L.B., Sorensen H.I. et al. (2007) J Antimicrob Chemother,60, 145-7.
65. Han C., Yang Y., Wang M., Wang A., Lu Q., Xu X., Wang C., Liu L., Deng Q. and Shen X. (2010)Microbiol Immunol, 54, 123–128.
66. Mammeri H., Van De Loo M., Poirel L., Martinez-Martinez L.and Nordmann P. (2005) Antimicrob Agents Chemother, 49, 71–6.
67. Fang H., Huang H., Shi Y., Hedin G., Nord C.E. and Ullberg M. (2009) Int J Antimicrob Agents, 34,268–270.
68. Jeong J.Y., Yoon H.J., Kim E.S., Lee Y., Choi S.H., Kim N.J.,Woo J.H. and Kim Y.S. (2005) Antimicrob Agents Chemother,49, 2522–4.
69. Poirel L., Leviandier C. andNordmann P. (2006) Antimicrob Agents Chemother,50, 3992–7.
70. Liassine N., Zulueta-Rodriguez P., Corbel C., Lascols C., Soussy C.J., et al. (2008) J AntimicrobChemother, 62,1151–1152.
71. Robicsek A., Strahilevitz J., Sahm D.F., Jacoby G.A., Hooper D.C.(2006) Antimicrob Agents Chemother, 50,2872–2874.
72. Lavilla S., González-López J.J., Sabaté M., García-Fernández A., Larrosa M.N., Bartolomé R.M., Carattoli A. and Prats G. (2008) J Antimicrob Chemother, 61, 291–295.
73. Jiang Y., Zhou Z., Qian Y., Wei Z., Yu Y., Hu S. and Li L. (2008) J Antimicrob Chemother, 61,1003–1006.
74. Briales A., Rodrı´guez-Martı´nez J.M., Velasco C., De Alba P.D., Rodriguez-Bano J., Martinez-Martinez L. et al. (2012) Int J Anti-microb Agents, 39,431–4.
75. Paltansing S., Kraakman M.E.M., Ras J.M.C., Wessels E. and Bernards A.T. (2013) J Antimicrob Chemother, 68,40–5.
76. Karah N., Poirel L., Bengtsson S., Sundqvist M., Kahlmeter G., Nordmann P. et al. (2010) DiagnMicrobiol Infect Dis, 66,425–31.
77. Lavigne J.P., Marchandin H., Delmas J. et al. (2006) Antimicrob Agents Chemother,50, 4224–8.
78. Wang M., Sahm D.F., Jacoby G.A. and Hooper D.C. (2004) Antimicrob Agents Chemother,48,1295-9.
79. Li X.Z. (2005) Int J Antimicrob Agents,25,453-63.
80. Okade H., Nakagawa S., Sakagami T., Hisada H., Nomura N., Mitsuyama J., Yamagishi Y. andMikamo H.(2014) J Infect Chemother, 20,778-783.
81. Yang H., Chen H., Yang Q., Chen M. and Wang H. (2008) Antimicrobial Agents Chemother, 52,4268-73.
82. Jacoby G. A., Strahilevitz J., Hooper D. C. (2015) Plasmid-Mediated Quinolone Resistance: in Plasmids: Biology and Impact in Biotechnology and Discovery. Editors: Tolmasky M. E., Alonso J. C. . American Society for Microbiology, Washington DC.